Toward Understanding the Impact of Dimerization Interfaces in Angiotensin II Type 1 Receptor

dc.contributor.authorErol, Ismail
dc.contributor.authorCosut, Bunyemin
dc.contributor.authorDurdagi, Serdar
dc.date.accessioned2025-10-29T11:20:43Z
dc.date.issued2019
dc.departmentFakülteler, Temel Bilimler Fakültesi, Kimya Bölümü
dc.description.abstractAngiotensin II type 1 receptor (AT1R) is a prototypical class A G protein-coupled receptor (GPCR) that has an important role in cardiovascular pathologies and blood pressure regulation as well as in the central nervous system. GPCRs may exist and function as monomers; however, they can assemble to form higher order structures, and as a result of oligomerization, their function and signaling profiles can be altered. In the case of AT1R, the classical G alpha(q/11) pathway is initiated with endogenous agonist angiotensin II binding. A variety of cardiovascular pathologies such as heart failure, diabetic nephropathy, atherosclerosis, and hypertension are associated with this pathway. Recent findings reveal that AT1R can form homodimers and activate the noncanonical (beta-arrestin-mediated) pathway. Nevertheless, the exact dimerization interface and atomic details of AT1R homodimerization have not been still elucidated. Here, six different symmetrical dimer interfaces of AT1R are considered, and homodimers were constructed using other published GPCR crystal dimer interfaces as template structures. These AT1R homodimers were then inserted into the model membrane bilayers and subjected to all-atom molecular dynamics simulations. Our simulation results along with the principal component analysis and water pathway analysis suggest four different interfaces as the most plausible: symmetrical transmembrane (TM)1,2,8; TM5; TM4; and TM4,5 AT1R dimer interfaces that consist of one inactive and one active protomer. Moreover, we identified ILE238(6.33) as a hub residue in the stabilization of the inactive state of AT1R.
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [214Z122]
dc.description.sponsorshipThe numerical calculations reported in this paper were fully performed at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources). This work was supported by the Scientific and Technological Research Council of Turkey (TUBITAK); project no.: 214Z122.
dc.identifier.doi10.1021/acs.jcim.9b00294
dc.identifier.endpage4327
dc.identifier.issn1549-9596
dc.identifier.issn1549-960X
dc.identifier.issue10
dc.identifier.orcid0000-0002-0426-0905
dc.identifier.pmid31429557
dc.identifier.scopus2-s2.0-85072831833
dc.identifier.scopusqualityQ1
dc.identifier.startpage4314
dc.identifier.urihttps://doi.org/10.1021/acs.jcim.9b00294
dc.identifier.urihttps://hdl.handle.net/20.500.14854/8708
dc.identifier.volume59
dc.identifier.wosWOS:000503918200026
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherAmer Chemical Soc
dc.relation.ispartofJournal of Chemical Information and Modeling
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_WOS_20251020
dc.subjectNeutral Antihypertensive Oxazalone
dc.subjectProtein-Coupled Receptors
dc.subjectCrystal-Structure
dc.subjectAt(1) Receptor
dc.subjectSignal-Transduction
dc.subjectOpioid Receptor
dc.subjectTransmembrane Domains
dc.subjectArrestin Recruitment
dc.subjectStructural Insights
dc.subjectBinding-Site
dc.titleToward Understanding the Impact of Dimerization Interfaces in Angiotensin II Type 1 Receptor
dc.typeArticle

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