From Secretion in Pichia pastoris to Application in Apple Juice Processing: Exo-Polygalacturonase from Sporothrix schenckii 1099-18

dc.contributor.authorKaratas, Ersin
dc.contributor.authorTulek, Ahmet
dc.contributor.authorCakar, Mehmet Mervan
dc.contributor.authorTamturk, Faruk
dc.contributor.authorAktas, Fatih
dc.contributor.authorBinay, Baris
dc.date.accessioned2025-10-29T11:09:39Z
dc.date.issued2021
dc.departmentFakülteler, Mühendislik Fakültesi, Biyomühendislik Bölümü
dc.description.abstractBackground: Polygalacturonases are a group of enzymes under pectinolytic enzymes related to enzymes that hydrolyse pectic substances. Polygalacturonases have been used in various industrial applications such as fruit juice clarification, retting of plant fibers, wastewater treatment drinks fermentation, and oil extraction. Objectives: The study was evaluated at the heterologous expression, purification, biochemical characterization, computational modeling, and performance in apple juice clarification of a new exo-polygalacturonase from Sporothrix schenckii 1099-18 (SsExo-PG) in Pichia pastoris. Methods: Recombinant DNA technology was used in this study. Two different pPIC9K plasmids were constructed with native signal sequence-ssexo-pg and alpha signal sequence-ssexo-pg separately. Protein expression and purification performed after plasmids transformed into the Pichia pastoris. Biochemical and structural analyses were performed by using pure SsExo-PG. Results: The purification of SsExo-PG was achieved using a Ni-NTA chromatography system. The enzyme was found to have a molecular mass of approximately 52 kDa. SsExo-PG presented as stable at a wide range of temperature and pH values, and to be more storage stable than other commercial pectinolytic enzyme mixtures. Structural analysis revealed that the catalytic residues of SsEx-o-PG are somewhat similar to other Exo-PGs. The K-M and k(cat) values for the degradation of polygalacturonic acid (PGA) by the purified enzyme were found to be 0.5868 mu M and 179 s(-1), respectively. Cu2+ was found to enhance SsExo-PG activity while Ag2+ and Fe2+ almost completely inhibited enzyme activity. The enzyme reduced turbidity up to 80% thus enhanced the clarification of apple juice. SsExo-PG showed promising performance when compared with other commercial pectinolytic enzyme mixtures. Conclusion: The clarification potential of SsExo-PG was revealed by comparing it with commercial pectinolytic enzymes. The following parameters of the process of apple juice clarification processes showed that SsExo-PG is highly stable and has a novel performance.
dc.description.sponsorshipDuzce University Scientific Research Projects Department (DUBAP) [2020.06.02.1092]
dc.description.sponsorshipThis work was fully supported by a grant from the Duzce University Scientific Research Projects Department (DUBAP) (Grant number: 2020.06.02.1092).
dc.identifier.doi10.2174/1871530321666210106110400
dc.identifier.endpage830
dc.identifier.issn0929-8665
dc.identifier.issn1875-5305
dc.identifier.issue7
dc.identifier.orcid0000-0001-6848-7618
dc.identifier.orcid0000-0003-1079-7837
dc.identifier.orcid0000-0002-6190-6549
dc.identifier.orcid0000-0002-2031-298X
dc.identifier.orcid0000-0001-6972-5841
dc.identifier.pmid33413052
dc.identifier.scopus2-s2.0-85115040276
dc.identifier.scopusqualityQ3
dc.identifier.startpage817
dc.identifier.urihttps://doi.org/10.2174/1871530321666210106110400
dc.identifier.urihttps://hdl.handle.net/20.500.14854/5930
dc.identifier.volume28
dc.identifier.wosWOS:000683897300001
dc.identifier.wosqualityQ4
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherBentham Science Publ Ltd
dc.relation.ispartofProtein and Peptide Letters
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_WOS_20251020
dc.subjectSporothrix schenckii 1099-18
dc.subjectExo-polygalacturonase
dc.subjectheterologous expression
dc.subjectPichia pastoris
dc.subjectapple juice clarifi-cation
dc.subjectstructural modelling
dc.titleFrom Secretion in Pichia pastoris to Application in Apple Juice Processing: Exo-Polygalacturonase from Sporothrix schenckii 1099-18
dc.typeArticle

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