Evaluation of zma-miR408 and its target genes function on maize (Zea mays) leaf growth response to cold stress by VIGS-based STTM approach

dc.contributor.authorAkgul, Burak
dc.contributor.authorAydinoglu, Fatma
dc.date.accessioned2025-10-29T11:27:38Z
dc.date.issued2025
dc.departmentGebze Teknik Üniversitesi
dc.description.abstractmiR408 is a conserved plant miRNA family that is known to regulate genes involved in copper metabolism. However, the function of miR408 in maize leaf growth regulation under cold stress isn't defined. In this study, endogenous maize miR408 was transiently silenced by using virus-induced gene silencing (VIGS) combined with short tandem target mimic (STTM) approaches. To this end, STTM-miR408a/b was designed, synthesized, and applied to maize seedlings. Subsequently, STTM-miR408a/b (STTM) and mock-treated (M) seedlings were subjected to cold stress (C) and the growth response of the seedlings was monitored. Finally, STTM-miR408a/btreatment successfully downregulated the expression of endogenous mir408a/b and upregulated their putative targets Basic Blue Protein (BBP) and Blue Copper Protein (BCP) antagonistically in the STTM and STTM_C groups compared to M and M_C groups. On the other hand, their putative target Laccase (LAC22) gene was upregulated in the STTM group compared to the M group, but there were no significant expression differences between the M_C and STTM_C groups. The elongation rate of the STTM-miR408a/b-treated second and third leaves was reduced by 10% and 19% resulting in 19% and 11% shortening, respectively. Furthermore, the activity of catalase (CAT) and glutathione reductase (GR) was decreased by 57% in STTM, M_C, and STTM_C, and 29% and 28% in the M_C and STTM_C groups and ascorbate peroxidase (APX) was increased by 15% in M_C and STTM_C groups, respectively. These findings illuminated the maize leaf growth response to cold via regulation of expression of miR408 and its target genes and antioxidant system.
dc.description.sponsorshipGebze Technical University [G.T.U. BAP 2019-A-105-4]
dc.description.sponsorshipThis study was supported by Gebze Technical University by a grand number 'G.T.U. BAP 2019-A-105-4 ' . We are thankful to Prof. Dr. Nuri Ozturk for assistance in cloning experiments.
dc.identifier.doi10.1016/j.gene.2024.149161
dc.identifier.issn0378-1119
dc.identifier.issn1879-0038
dc.identifier.orcid0000-0002-9974-045X
dc.identifier.pmid39674290
dc.identifier.scopus2-s2.0-85211999976
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.1016/j.gene.2024.149161
dc.identifier.urihttps://hdl.handle.net/20.500.14854/10837
dc.identifier.volume938
dc.identifier.wosWOS:001389681800001
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherElsevier
dc.relation.ispartofGene
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_WOS_20251020
dc.subjectCold stress
dc.subjectmiRNA
dc.subjectMaize leaf growth
dc.subjectShort tandem target mimic
dc.subjectVirus-induced gene silencing
dc.titleEvaluation of zma-miR408 and its target genes function on maize (Zea mays) leaf growth response to cold stress by VIGS-based STTM approach
dc.typeArticle

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