Formation of a complex of the catalytic subunit of pyruvate dehydrogenase phosphatase isoform 1 (PDP1c) and the L2 domain forms a Ca2+ binding site and captures PDP1c as a monomer

dc.contributor.authorTürkan, Ali
dc.contributor.authorHiromasa, Yasuaki
dc.contributor.authorRoche, Thomas E.
dc.date.accessioned2025-10-29T12:07:59Z
dc.date.issued2004
dc.departmentGebze Teknik Üniversitesi
dc.description.abstractPyruvate dehydrogenase phosphatase isoform 1 (PDP1) is a heterodimer with a catalytic subunit (PDP1c) and a regulatory subunit (PDP1r). The activities of PDP1 or just PDP1c are greatly increased by Ca2+-dependent binding to the L2 (inner lipoyl) domain of the dihydrolipoyl acetyltransferase (E2) core. Using EGTA-Ca buffers, the dependence of PDP1 or PDP1c on the level of free Ca2+ was evaluated in activity and L2 binding studies. An increase in the Mg2+ concentration decreased the Ca2+ concentration required for half-maximal activation of PDP1 from 3 to 1 ?M, but this parameter was unchanged at 3 ?M with PDP1c. Near 1 ?M Ca2+, tight binding of PDP1 but not PDP1c to gel-anchored L2 required Mg2+. With just Ca2+ included, some PDP1c separated from PDP1r and remained more tightly bound to L2 than intact PDP1. Thus, formation of the PDP1c·Ca2+·L2 complex is supported by micromolar Ca2+ concentrations and becomes sensitive to the Mg2+ level when PDP1c is bound to PDP1r. Sedimentation velocity and equilibrium studies revealed that PDP1c exists as a reversible monomer/dimer mixture with an equilibrium dissociation constant of 8.0 ± 2.5 ?M. L2 binds tightly and preferentially to the PDP1c monomer. Approximately 45 PDP1c monomers bind to the E2 60mer with a K<inf>d</inf> of ?0.3?M. Isothermal titration calorimetry and 45Ca2+ binding studies failed to detect binding of Ca2+ (<100 ?M) to L2 or PDP1c, alone, but readily detected binding to L2 and PDP1c. Therefore, both proteins are required for formation of a complex with tightly held Ca2+, and complex formation hinders the tendency of PDP1c to form a dimer. © 2008 Elsevier B.V., All rights reserved.; MEDLINE® is the source for the MeSH terms of this document.
dc.identifier.doi10.1021/bi048901y
dc.identifier.endpage15085
dc.identifier.issn1520-4995
dc.identifier.issn0006-2960
dc.identifier.issue47
dc.identifier.pmid15554715
dc.identifier.scopus2-s2.0-9744285671
dc.identifier.scopusqualityQ3
dc.identifier.startpage15073
dc.identifier.urihttps://doi.org/10.1021/bi048901y
dc.identifier.urihttps://hdl.handle.net/20.500.14854/14237
dc.identifier.volume43
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.relation.ispartofBiochemistry
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_Scopus_20251020
dc.subjectActivation analysis
dc.subjectCalorimetry
dc.subjectConcentration (process)
dc.subjectDimers
dc.subjectGels
dc.subjectIsotherms
dc.subjectMixtures
dc.subjectMonomers
dc.subjectPhosphates
dc.subjectSedimentation
dc.subjectTitration
dc.subjectHeterodimer
dc.subjectIsothermal titration calorimetry
dc.subjectSedimentation velocity
dc.subjectCatalysis
dc.subjectcalcium ion
dc.subjectisoprotein
dc.subjectmagnesium ion
dc.subjectmonomer
dc.subjectpyruvate dehydrogenase phosphatase
dc.subjectpyruvate dehydrogenase phosphatase 1c
dc.subjectunclassified drug
dc.subjectarticle
dc.subjectbinding affinity
dc.subjectbinding assay
dc.subjectbinding site
dc.subjectcalcium binding
dc.subjectcalorimetry
dc.subjectcomplex formation
dc.subjectdimerization
dc.subjectdissociation constant
dc.subjectenzyme active site
dc.subjectenzyme activity
dc.subjectpriority journal
dc.subjectprotein domain
dc.subjectsedimentation
dc.subjectAnimals
dc.subjectBinding Sites
dc.subjectBuffers
dc.subjectCalcium
dc.subjectCatalytic Domain
dc.subjectCattle
dc.subjectDose-Response Relationship, Drug
dc.subjectEgtazic Acid
dc.subjectEnzyme Activation
dc.subjectHumans
dc.subjectIsoenzymes
dc.subjectMagnesium
dc.subjectModels, Chemical
dc.subjectProtein Binding
dc.subjectProtein Structure, Tertiary
dc.subjectProtein Subunits
dc.subjectPyruvate Dehydrogenase (Lipoamide)-Phosphatase
dc.titleFormation of a complex of the catalytic subunit of pyruvate dehydrogenase phosphatase isoform 1 (PDP1c) and the L2 domain forms a Ca2+ binding site and captures PDP1c as a monomer
dc.typeArticle

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