Formation of a complex of the catalytic subunit of pyruvate dehydrogenase phosphatase isoform 1 (PDP1c) and the L2 domain forms a Ca2+ binding site and captures PDP1c as a monomer
| dc.contributor.author | Türkan, Ali | |
| dc.contributor.author | Hiromasa, Yasuaki | |
| dc.contributor.author | Roche, Thomas E. | |
| dc.date.accessioned | 2025-10-29T12:07:59Z | |
| dc.date.issued | 2004 | |
| dc.department | Gebze Teknik Üniversitesi | |
| dc.description.abstract | Pyruvate dehydrogenase phosphatase isoform 1 (PDP1) is a heterodimer with a catalytic subunit (PDP1c) and a regulatory subunit (PDP1r). The activities of PDP1 or just PDP1c are greatly increased by Ca2+-dependent binding to the L2 (inner lipoyl) domain of the dihydrolipoyl acetyltransferase (E2) core. Using EGTA-Ca buffers, the dependence of PDP1 or PDP1c on the level of free Ca2+ was evaluated in activity and L2 binding studies. An increase in the Mg2+ concentration decreased the Ca2+ concentration required for half-maximal activation of PDP1 from 3 to 1 ?M, but this parameter was unchanged at 3 ?M with PDP1c. Near 1 ?M Ca2+, tight binding of PDP1 but not PDP1c to gel-anchored L2 required Mg2+. With just Ca2+ included, some PDP1c separated from PDP1r and remained more tightly bound to L2 than intact PDP1. Thus, formation of the PDP1c·Ca2+·L2 complex is supported by micromolar Ca2+ concentrations and becomes sensitive to the Mg2+ level when PDP1c is bound to PDP1r. Sedimentation velocity and equilibrium studies revealed that PDP1c exists as a reversible monomer/dimer mixture with an equilibrium dissociation constant of 8.0 ± 2.5 ?M. L2 binds tightly and preferentially to the PDP1c monomer. Approximately 45 PDP1c monomers bind to the E2 60mer with a K<inf>d</inf> of ?0.3?M. Isothermal titration calorimetry and 45Ca2+ binding studies failed to detect binding of Ca2+ (<100 ?M) to L2 or PDP1c, alone, but readily detected binding to L2 and PDP1c. Therefore, both proteins are required for formation of a complex with tightly held Ca2+, and complex formation hinders the tendency of PDP1c to form a dimer. © 2008 Elsevier B.V., All rights reserved.; MEDLINE® is the source for the MeSH terms of this document. | |
| dc.identifier.doi | 10.1021/bi048901y | |
| dc.identifier.endpage | 15085 | |
| dc.identifier.issn | 1520-4995 | |
| dc.identifier.issn | 0006-2960 | |
| dc.identifier.issue | 47 | |
| dc.identifier.pmid | 15554715 | |
| dc.identifier.scopus | 2-s2.0-9744285671 | |
| dc.identifier.scopusquality | Q3 | |
| dc.identifier.startpage | 15073 | |
| dc.identifier.uri | https://doi.org/10.1021/bi048901y | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14854/14237 | |
| dc.identifier.volume | 43 | |
| dc.indekslendigikaynak | Scopus | |
| dc.indekslendigikaynak | PubMed | |
| dc.language.iso | en | |
| dc.relation.ispartof | Biochemistry | |
| dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | |
| dc.rights | info:eu-repo/semantics/closedAccess | |
| dc.snmz | KA_Scopus_20251020 | |
| dc.subject | Activation analysis | |
| dc.subject | Calorimetry | |
| dc.subject | Concentration (process) | |
| dc.subject | Dimers | |
| dc.subject | Gels | |
| dc.subject | Isotherms | |
| dc.subject | Mixtures | |
| dc.subject | Monomers | |
| dc.subject | Phosphates | |
| dc.subject | Sedimentation | |
| dc.subject | Titration | |
| dc.subject | Heterodimer | |
| dc.subject | Isothermal titration calorimetry | |
| dc.subject | Sedimentation velocity | |
| dc.subject | Catalysis | |
| dc.subject | calcium ion | |
| dc.subject | isoprotein | |
| dc.subject | magnesium ion | |
| dc.subject | monomer | |
| dc.subject | pyruvate dehydrogenase phosphatase | |
| dc.subject | pyruvate dehydrogenase phosphatase 1c | |
| dc.subject | unclassified drug | |
| dc.subject | article | |
| dc.subject | binding affinity | |
| dc.subject | binding assay | |
| dc.subject | binding site | |
| dc.subject | calcium binding | |
| dc.subject | calorimetry | |
| dc.subject | complex formation | |
| dc.subject | dimerization | |
| dc.subject | dissociation constant | |
| dc.subject | enzyme active site | |
| dc.subject | enzyme activity | |
| dc.subject | priority journal | |
| dc.subject | protein domain | |
| dc.subject | sedimentation | |
| dc.subject | Animals | |
| dc.subject | Binding Sites | |
| dc.subject | Buffers | |
| dc.subject | Calcium | |
| dc.subject | Catalytic Domain | |
| dc.subject | Cattle | |
| dc.subject | Dose-Response Relationship, Drug | |
| dc.subject | Egtazic Acid | |
| dc.subject | Enzyme Activation | |
| dc.subject | Humans | |
| dc.subject | Isoenzymes | |
| dc.subject | Magnesium | |
| dc.subject | Models, Chemical | |
| dc.subject | Protein Binding | |
| dc.subject | Protein Structure, Tertiary | |
| dc.subject | Protein Subunits | |
| dc.subject | Pyruvate Dehydrogenase (Lipoamide)-Phosphatase | |
| dc.title | Formation of a complex of the catalytic subunit of pyruvate dehydrogenase phosphatase isoform 1 (PDP1c) and the L2 domain forms a Ca2+ binding site and captures PDP1c as a monomer | |
| dc.type | Article |








