A neural network potential for the IRMOF series and its application for thermal and mechanical behaviors

dc.contributor.authorTayfuroglu, Omer
dc.contributor.authorKocak, Abdulkadir
dc.contributor.authorZorlu, Yunus
dc.date.accessioned2025-10-29T11:19:55Z
dc.date.issued2022
dc.departmentFakülteler, Temel Bilimler Fakültesi, Kimya Bölümü
dc.description.abstractMetal-organic frameworks (MOFs) with their exceptional porous and organized structures have been the subject of numerous applications. Predicting the bulk properties from atomistic simulations requires the most accurate force fields, which is still a major problem due to MOFs' hybrid structures governed by covalent, ionic and dispersion forces. Application of ab initio molecular dynamics to such large periodic systems is thus beyond the current computational power. Therefore, alternative strategies must be developed to reduce computational cost without losing reliability. In this work, we construct a generic neural network potential (NNP) for the isoreticular metal-organic framework (IRMOF) series trained by PBE-D4/def2-TZVP reference data of MOF fragments. We confirmed the success of the resulting NNP on both fragments and bulk MOF structures by prediction of properties such as equilibrium lattice constants, phonon density of states and linker orientation. The RMSE values of energy and force for the fragments are only 0.0017 eV atom(-1) and 0.15 eV angstrom(-1), respectively. The NNP predicted equilibrium lattice constants of bulk structures, even though not included in training, are off by only 0.2-2.4% from experimental results. Moreover, our fragment based NNP successfully predicts the phenylene ring torsional energy barrier, equilibrium bond distances and vibrational density of states of bulk MOFs. Furthermore, the NNP enables revealing the odd behaviors of selected MOFs such as the dual thermal expansion properties and the effect of mechanical strain on the adsorption of hydrogen and methane molecules. The NNP based molecular dynamics (MD) simulations suggest IRMOF-4 and IRMOF-7 to have positive-to-negative thermal expansion coefficients while the rest to have only negative thermal expansion at the studied temperatures of 200 K to 400 K. The deformation of the bulk structure by reduction of the unit cell volume has been shown to increase the volumetric methane uptake in IRMOF-1 but decrease the volumetric methane uptake in IRMOF-7 due to the steric hindrance. To the best of our knowledge, this study presents the first pre-trained model publicly available giving the opportunity for the researchers in the field to investigate different aspects of IRMOFs by performing large-scale simulation at the first-principles level of accuracy.
dc.description.sponsorshipTurkish Higher Education Council [100/2000]
dc.description.sponsorshipTUBITAK BIDEB National Scholarship Program [2211-C]
dc.description.sponsorshipO. T. was supported by the Turkish Higher Education Council's 100/2000 PhD fellowship program and the TUBITAK BIDEB National Scholarship Program for PhD students (2211-C). The numerical calculations reported in this paper were fully performed at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources).
dc.identifier.doi10.1039/d1cp05973d
dc.identifier.endpage11897
dc.identifier.issn1463-9076
dc.identifier.issn1463-9084
dc.identifier.issue19
dc.identifier.orcid0000-0001-6891-6929
dc.identifier.orcid0000-0001-7834-3132
dc.identifier.pmid35510633
dc.identifier.scopus2-s2.0-85131247383
dc.identifier.scopusqualityQ1
dc.identifier.startpage11882
dc.identifier.urihttps://doi.org/10.1039/d1cp05973d
dc.identifier.urihttps://hdl.handle.net/20.500.14854/8355
dc.identifier.volume24
dc.identifier.wosWOS:000790835100001
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherRoyal Soc Chemistry
dc.relation.ispartofPhysical Chemistry Chemical Physics
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_WOS_20251020
dc.subjectMetal-Organic Frameworks
dc.subjectForce-Field
dc.subjectMethane Storage
dc.subjectExpansion
dc.subjectDynamics
dc.subjectDesign
dc.subjectApproximation
dc.subjectVisualization
dc.subjectPurification
dc.subjectSimulations
dc.titleA neural network potential for the IRMOF series and its application for thermal and mechanical behaviors
dc.typeArticle

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