Molecular dynamics simulations reveal the plausible agonism/antagonism mechanism by steroids on androgen receptor mutations

dc.contributor.authorKocak, Abdulkadir
dc.contributor.authorYildiz, Muslum
dc.date.accessioned2025-10-29T11:26:28Z
dc.date.issued2022
dc.departmentFakülteler, Temel Bilimler Fakültesi, Kimya Bölümü
dc.description.abstractAndrogen receptors (AR) are the primary drug target in prostate cancer (PCa). There are several drugs developed against its activity for prostate cancer treatment, but cancer cells revive AR signaling against those drugs by using alternative steroids such as glucocorticoids. In addition, antagonists become agonists due to emergence of mutations in AR gene. The mechanism by which antagonists are converted into agonists and how AR signaling is recovered by other steroids has yet to be fully elucidated. In this study, we interrogated the role of bicalutamide conformation in its antagonist function and how glucocorticoids such as prednisolone and dexamethasone revive AR signaling at the molecular level by means of molecular dynamics. We found that the closed conformation of bicalutamide is essential for its antagonist function and W741 residue is forcing it into this conformation. Moreover, we show that prednisolone and dexamethasone behave like natural agonist DHT which confirm the experimental results that show their role in the reviving AR signaling in the case of ARL701H mutation.
dc.description.sponsorshipScientific and Technological Research Council of Turkey-TuBITAK [120Z732]
dc.description.sponsorshipThe numerical calculations reported in this paper were partially performed at TUBITAK ULAKBIM, High Performance and Grid Computing Center (TRUBA resources) . This work supported by Scientific and Technological Research Council of Turkey-TuBITAK (project number: 120Z732) .
dc.identifier.doi10.1016/j.jmgm.2021.108081
dc.identifier.issn1093-3263
dc.identifier.issn1873-4243
dc.identifier.orcid0000-0001-8396-1461
dc.identifier.orcid0000-0001-6891-6929
dc.identifier.pmid34826715
dc.identifier.scopus2-s2.0-85119679563
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.1016/j.jmgm.2021.108081
dc.identifier.urihttps://hdl.handle.net/20.500.14854/10296
dc.identifier.volume111
dc.identifier.wosWOS:000725698700002
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherElsevier Science Inc
dc.relation.ispartofJournal of Molecular Graphics & Modelling
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_WOS_20251020
dc.subjectAndrogen receptor
dc.subjectGlucocorticoid
dc.subjectMolecular dynamics
dc.subjectFree energy
dc.subjectAR signaling
dc.subjectMutation
dc.titleMolecular dynamics simulations reveal the plausible agonism/antagonism mechanism by steroids on androgen receptor mutations
dc.typeArticle

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