Investigation of iron release from the N- and C-lobes of human serum transferrin by quantum chemical calculations

dc.contributor.authorFindik, Basak Koca
dc.contributor.authorCilesiz, Umut
dc.contributor.authorBali, Semiha Kevser
dc.contributor.authorAtilgan, Canan
dc.contributor.authorAviyente, Viktorya
dc.contributor.authorDedeoglu, Burcu
dc.date.accessioned2025-10-29T11:19:46Z
dc.date.issued2022
dc.departmentFakülteler, Temel Bilimler Fakültesi, Kimya Bölümü
dc.description.abstractHuman serum transferrin binds ferric ions with high affinity and delivers them into cells via receptor-mediated endocytosis upon a decrease in pH in the endosome. Protonation events and conformational changes are known to play an important role in iron-release though the release is not yet fully understood. Human serum transferrin consists of two similar lobes which release iron at different rates. In this study, we investigate the iron binding sites of N- and C-lobes using quantum mechanical tools, particularly, the quantum chemical cluster approach. This study supports the inevitable role of axial tyrosine for the release of iron in quantum chemical models and provides valuable information about the proton transfer pathways for the protonation of Tyr188 and Tyr517 in N- and C-lobes, respectively. The calculations show that the release process is similar in both lobes; however, the energetic differences of the release process in N- and C-lobes, demonstrated for the first time, indicated that the release of iron in the N-lobe is thermodynamically favorable, in contrast to the one in the C-lobe.
dc.description.sponsorshipTUBITAK [121Z329]
dc.description.sponsorshipNIH [P41-GM103311]
dc.description.sponsorshipThis project is supported by TUBITAK under the grant number 121Z329. Additional computing resources used in this work were provided by the TUBITAK ULAKBIM High Performance and Grid Computing Center. We thank Dr Haleh Abdizadeh for stimulating discussions. Molecular graphics are created with UCSF Chimera,56 developed by the Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco, with support from NIH P41-GM103311.
dc.identifier.doi10.1039/d2ob01518h
dc.identifier.endpage8774
dc.identifier.issn1477-0520
dc.identifier.issn1477-0539
dc.identifier.issue44
dc.identifier.orcid0000-0003-4409-1162
dc.identifier.orcid0000-0002-5213-9712
dc.identifier.orcid0000-0001-9430-4096
dc.identifier.orcid0000-0002-5857-6884
dc.identifier.orcid0000-0003-0557-6044
dc.identifier.pmid36314473
dc.identifier.scopus2-s2.0-85141766418
dc.identifier.scopusqualityQ2
dc.identifier.startpage8766
dc.identifier.urihttps://doi.org/10.1039/d2ob01518h
dc.identifier.urihttps://hdl.handle.net/20.500.14854/8319
dc.identifier.volume20
dc.identifier.wosWOS:000876491800001
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherRoyal Soc Chemistry
dc.relation.ispartofOrganic & Biomolecular Chemistry
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_WOS_20251020
dc.subjectMolecular-Dynamics Simulations
dc.subjectFull Reaction-Mechanism
dc.subjectDuck Ovotransferrin
dc.subjectHen Ovotransferrin
dc.subjectCrystal-Structure
dc.subjectCluster Approach
dc.subjectBinding
dc.subjectReceptor
dc.subjectProtonation
dc.subjectResolution
dc.titleInvestigation of iron release from the N- and C-lobes of human serum transferrin by quantum chemical calculations
dc.typeArticle

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