Investigation of iron release from the N- and C-lobes of human serum transferrin by quantum chemical calculations
| dc.contributor.author | Findik, Basak Koca | |
| dc.contributor.author | Cilesiz, Umut | |
| dc.contributor.author | Bali, Semiha Kevser | |
| dc.contributor.author | Atilgan, Canan | |
| dc.contributor.author | Aviyente, Viktorya | |
| dc.contributor.author | Dedeoglu, Burcu | |
| dc.date.accessioned | 2025-10-29T11:19:46Z | |
| dc.date.issued | 2022 | |
| dc.department | Fakülteler, Temel Bilimler Fakültesi, Kimya Bölümü | |
| dc.description.abstract | Human serum transferrin binds ferric ions with high affinity and delivers them into cells via receptor-mediated endocytosis upon a decrease in pH in the endosome. Protonation events and conformational changes are known to play an important role in iron-release though the release is not yet fully understood. Human serum transferrin consists of two similar lobes which release iron at different rates. In this study, we investigate the iron binding sites of N- and C-lobes using quantum mechanical tools, particularly, the quantum chemical cluster approach. This study supports the inevitable role of axial tyrosine for the release of iron in quantum chemical models and provides valuable information about the proton transfer pathways for the protonation of Tyr188 and Tyr517 in N- and C-lobes, respectively. The calculations show that the release process is similar in both lobes; however, the energetic differences of the release process in N- and C-lobes, demonstrated for the first time, indicated that the release of iron in the N-lobe is thermodynamically favorable, in contrast to the one in the C-lobe. | |
| dc.description.sponsorship | TUBITAK [121Z329] | |
| dc.description.sponsorship | NIH [P41-GM103311] | |
| dc.description.sponsorship | This project is supported by TUBITAK under the grant number 121Z329. Additional computing resources used in this work were provided by the TUBITAK ULAKBIM High Performance and Grid Computing Center. We thank Dr Haleh Abdizadeh for stimulating discussions. Molecular graphics are created with UCSF Chimera,56 developed by the Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco, with support from NIH P41-GM103311. | |
| dc.identifier.doi | 10.1039/d2ob01518h | |
| dc.identifier.endpage | 8774 | |
| dc.identifier.issn | 1477-0520 | |
| dc.identifier.issn | 1477-0539 | |
| dc.identifier.issue | 44 | |
| dc.identifier.orcid | 0000-0003-4409-1162 | |
| dc.identifier.orcid | 0000-0002-5213-9712 | |
| dc.identifier.orcid | 0000-0001-9430-4096 | |
| dc.identifier.orcid | 0000-0002-5857-6884 | |
| dc.identifier.orcid | 0000-0003-0557-6044 | |
| dc.identifier.pmid | 36314473 | |
| dc.identifier.scopus | 2-s2.0-85141766418 | |
| dc.identifier.scopusquality | Q2 | |
| dc.identifier.startpage | 8766 | |
| dc.identifier.uri | https://doi.org/10.1039/d2ob01518h | |
| dc.identifier.uri | https://hdl.handle.net/20.500.14854/8319 | |
| dc.identifier.volume | 20 | |
| dc.identifier.wos | WOS:000876491800001 | |
| dc.identifier.wosquality | Q2 | |
| dc.indekslendigikaynak | Web of Science | |
| dc.indekslendigikaynak | Scopus | |
| dc.indekslendigikaynak | PubMed | |
| dc.language.iso | en | |
| dc.publisher | Royal Soc Chemistry | |
| dc.relation.ispartof | Organic & Biomolecular Chemistry | |
| dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | |
| dc.rights | info:eu-repo/semantics/closedAccess | |
| dc.snmz | KA_WOS_20251020 | |
| dc.subject | Molecular-Dynamics Simulations | |
| dc.subject | Full Reaction-Mechanism | |
| dc.subject | Duck Ovotransferrin | |
| dc.subject | Hen Ovotransferrin | |
| dc.subject | Crystal-Structure | |
| dc.subject | Cluster Approach | |
| dc.subject | Binding | |
| dc.subject | Receptor | |
| dc.subject | Protonation | |
| dc.subject | Resolution | |
| dc.title | Investigation of iron release from the N- and C-lobes of human serum transferrin by quantum chemical calculations | |
| dc.type | Article |








